Featured Research

from universities, journals, and other organizations

Bionimbus protected data cloud to enable researchers to analyze cancer data

Date:
May 20, 2013
Source:
National Science Foundation
Summary:
The University of Chicago has launched the first secure cloud-based computing system that enables researchers to access and analyze human genomic cancer information without the costly and cumbersome infrastructure normally needed to download and store massive amounts of data.

The Open Science Data Cloud comprises ten racks at the University of Chicago Kenwood Data Center.
Credit: Raymond C Parpart, University of Chicago

The University of Chicago has launched the first secure cloud-based computing system that enables researchers to access and analyze human genomic cancer information without the costly and cumbersome infrastructure normally needed to download and store massive amounts of data.

The Bionimbus Protected Data Cloud, as it is called, enables researchers who are authorized by the National Institutes of Health (NIH) to access and analyze data in The Cancer Genome Atlas (TCGA) without having to set up secure, compliant computing environments capable of managing and analyzing terabytes of data, download the data -- which can take weeks -- and then install the appropriate tools needed to perform the desired analyses.

Using technology that was developed in part by the Open Science Data Cloud, a National Science Foundation-supported project that is developing cloud infrastructure for large scientific datasets, the Bionimbus Protected Data Cloud provides researchers with a more cost- and time-effective mechanism to extract knowledge from massive amounts of data. Drawing insights from big data is imperative for addressing some of today's most vexing environmental, health and safety challenges.

"The open source technology underlying the Open Science Data Cloud enables researchers to manage and analyze the large data sets that are essential to tackling some of today's greatest challenges: from environmental monitoring to cancer genomics," said Robert L. Grossman, the director of the Open Science Data Cloud Project and a professor at the University of Chicago.

Today, as the only NIH-approved cloud-based system for TCGA data, the Bionimbus Protected Data Cloud allows researchers to focus on the analysis of large-scale cancer genome sequencing, which experts believe can unlock paths to early detection, appropriate treatment and prevention of cancer.

"We are excited that the Bionimbus Protected Data Cloud is now used for cancer genomics data so that researchers can more easily work with large datasets to understand genomic variations that seem to be one of the keys to the precise diagnosis and treatment of cancer," continued Grossman.

"With funding provided by NSF's Partnerships for International Research and Education [PIRE] program, NSF has sought to narrow the gap between the capability of modern scientific instruments to produce data and the ability of researchers to access, manage, analyze and share those data in a reliable and timely manner," said NSF Program Director Harold Stolberg.

"By embracing cloud computing as a global issue, this PIRE project brings together the expertise of many researchers, not only in the United States, but worldwide. Its success in helping researchers to access and analyze important human genomic cancer information is an exciting indicator of future developments with these technologies," he said.

Megan McNerney, an instructor of pathology at the University of Chicago, used Bionimbus to analyze data that led to her discovery that gene CUX1, which acts as a tumor suppressor, is frequently inactivated in acute myeloid leukemia.

"Bionimbus was critical for my work, as it was used for all aspects of the project, including secure storage of protected data, quality control of next-generation sequencing results, alignments, expression analysis, and algorithm development," she said. "The strength of Bionimbus, however, is the support that is provided for end users, which enabled both expert and non-expert team members to use the cloud."


Story Source:

The above story is based on materials provided by National Science Foundation. Note: Materials may be edited for content and length.


Cite This Page:

National Science Foundation. "Bionimbus protected data cloud to enable researchers to analyze cancer data." ScienceDaily. ScienceDaily, 20 May 2013. <www.sciencedaily.com/releases/2013/05/130520083239.htm>.
National Science Foundation. (2013, May 20). Bionimbus protected data cloud to enable researchers to analyze cancer data. ScienceDaily. Retrieved October 21, 2014 from www.sciencedaily.com/releases/2013/05/130520083239.htm
National Science Foundation. "Bionimbus protected data cloud to enable researchers to analyze cancer data." ScienceDaily. www.sciencedaily.com/releases/2013/05/130520083239.htm (accessed October 21, 2014).

Share This



More Computers & Math News

Tuesday, October 21, 2014

Featured Research

from universities, journals, and other organizations


Featured Videos

from AP, Reuters, AFP, and other news services

Thanks, Marty McFly! Hoverboards Could Be Coming In 2015

Thanks, Marty McFly! Hoverboards Could Be Coming In 2015

Newsy (Oct. 21, 2014) If you've ever watched "Back to the Future Part II" and wanted to get your hands on a hoverboard, well, you might soon be in luck. Video provided by Newsy
Powered by NewsLook.com
Robots to Fly Planes Where Humans Can't

Robots to Fly Planes Where Humans Can't

Reuters - Innovations Video Online (Oct. 21, 2014) Researchers in South Korea are developing a robotic pilot that could potentially replace humans in the cockpit. Unlike drones and autopilot programs which are configured for specific aircraft, the robots' humanoid design will allow it to fly any type of plane with no additional sensors. Ben Gruber reports. Video provided by Reuters
Powered by NewsLook.com
Japanese Scientists Unveil Floating 3D Projection

Japanese Scientists Unveil Floating 3D Projection

Reuters - Innovations Video Online (Oct. 20, 2014) Scientists in Tokyo have demonstrated what they say is the world's first 3D projection that floats in mid air. A laser that fires a pulse up to a thousand times a second superheats molecules in the air, creating a spark which can be guided to certain points in the air to shape what the human eye perceives as an image. Matthew Stock reports. Video provided by Reuters
Powered by NewsLook.com
Apple Enters Mobile Payment Business

Apple Enters Mobile Payment Business

AP (Oct. 20, 2014) Apple is making a strategic bet with the launch of Apple Pay, the mobile pay service aimed at turning your iPhone into your wallet. (Oct. 20) Video provided by AP
Powered by NewsLook.com

Search ScienceDaily

Number of stories in archives: 140,361

Find with keyword(s):
Enter a keyword or phrase to search ScienceDaily for related topics and research stories.

Save/Print:
Share:

Breaking News:

Strange & Offbeat Stories


Space & Time

Matter & Energy

Computers & Math

In Other News

... from NewsDaily.com

Science News

Health News

Environment News

Technology News



Save/Print:
Share:

Free Subscriptions


Get the latest science news with ScienceDaily's free email newsletters, updated daily and weekly. Or view hourly updated newsfeeds in your RSS reader:

Get Social & Mobile


Keep up to date with the latest news from ScienceDaily via social networks and mobile apps:

Have Feedback?


Tell us what you think of ScienceDaily -- we welcome both positive and negative comments. Have any problems using the site? Questions?
Mobile: iPhone Android Web
Follow: Facebook Twitter Google+
Subscribe: RSS Feeds Email Newsletters
Latest Headlines Health & Medicine Mind & Brain Space & Time Matter & Energy Computers & Math Plants & Animals Earth & Climate Fossils & Ruins