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Improving Our Ability To Peek Inside Molecules

Date:
September 18, 2008
Source:
DOE/Lawrence Livermore National Laboratory
Summary:
It's not easy to see a single molecule inside a living cell. Nevertheless, researchers are developing a new technique that will enable them to create detailed high-resolution images, giving scientists an unprecedented look at the atomic structure of cellular molecules.

Massively parallel holography at high resolutions. (a) A lithographic test sample imaged by scanning electron microscopy (SEM) next to a 30-nm-thick twin-prime 71x73 array with 44-nm square gold scattering elements. The scale bar is 2 mm. (b) The diffraction pattern collected at the ALS (1 x 106 photons in a five second exposure, 200 mm from the sample). (c) The real part of the reconstructed hologram. d) The simulation with 1 x 106 photons. The grey scale represents the real part of the hologram. (e) A simulation with the same number of photons, but a single reference pinhole. (f) Line through the two dots indicated in image (c).
Credit: Image courtesy of DOE/Lawrence Livermore National Laboratory

It's not easy to see a single molecule inside a living cell. Nevertheless, researchers at Lawrence Livermore National Laboratory are helping to develop a new technique that will enable them to create detailed high-resolution images, giving scientists an unprecedented look at the atomic structure of cellular molecules.

The LLNL team is collaborating with scientists across the country and in Germany and Sweden to utilize high-energy X-ray beams, combined with complex algorithms, to overcome difficulties in current technology.

The work began more than five years ago as a Laboratory Directed Research and Development (LDRD) project, headed by Stefano Marchesini. He has since transferred to Lawrence Berkeley Lab (LBNL), leaving the project in the hands of Stefan Hau-Riege, a materials science physicist at LLNL.

For now, the Advanced Light Source at LBNL and the FLASH facility in Hamburg, Germany, are being used to provide the X-ray beams. But a new facility under construction at Stanford University, the Linac Coherent Light Source (LCLS), will provide additional capabilities and greater imaging accuracy when it comes on line next year.

Another light source being built in Hamburg will be used as well. When completed in late 2013, the X-ray Free Electron Laser (XFEL) will be the world's longest artificial light source.

Using high-energy, extremely short-pulse - less than 100 femtoseconds, or one quadrillionth of a second - X-ray beams to examine nanoscale objects is not a new concept. The difficulty lies with the algorithms to convert the resulting patterns into usable images.

One method to increase the signal and resolution of the image is to include a second item with known features during the laser imaging. Known as a "reference object," it gives the researchers additional information with which to process the imaging data.

What is new is to use a very special reference object called a "uniformly redundant array" (URA). In this case, a combination of complex formulas known as a "Fourier Transform" and a "Hadamard Transform" are utilized to convert the data into an image that represents the object being examined. Hadamard transforms are commonly used in signal processing and data algorithms, including those used in photo and video compression.

According to Hau-Riege, "The resolution we achieved is among the best ever reported for holography of a micrometer-sized object, and we believe that it will improve in the future with the development of nano-arrays for Fourier Transform Holography at LCLS."

Other contributors to the findings include: Anton Barty, Matthias Frank, and Abraham Szöke, all from LLNL; researchers from LBNL; UC-Berkeley; Stanford University; Sweden's Uppsala University; the Centre for Free-Electron Laser Science at DESY in Hamburg, Germany; Arizona State University; and Princeton University.


Story Source:

The above story is based on materials provided by DOE/Lawrence Livermore National Laboratory. Note: Materials may be edited for content and length.


Journal Reference:

  1. Marchesini et al. Massively parallel X-ray holography. Nature Photonics, 2008; 2 (9): 560 DOI: 10.1038/nphoton.2008.154

Cite This Page:

DOE/Lawrence Livermore National Laboratory. "Improving Our Ability To Peek Inside Molecules." ScienceDaily. ScienceDaily, 18 September 2008. <www.sciencedaily.com/releases/2008/09/080916144006.htm>.
DOE/Lawrence Livermore National Laboratory. (2008, September 18). Improving Our Ability To Peek Inside Molecules. ScienceDaily. Retrieved August 1, 2014 from www.sciencedaily.com/releases/2008/09/080916144006.htm
DOE/Lawrence Livermore National Laboratory. "Improving Our Ability To Peek Inside Molecules." ScienceDaily. www.sciencedaily.com/releases/2008/09/080916144006.htm (accessed August 1, 2014).

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