Molecular Chains Line Up To Form Protopolymer

Weiss points out that in substrate-mediated interactions, those in which the surface participates in the electronic interactions between molecules, the surface itself acts as a catalyst, holding molecules in place and enabling them to align for reaction. "If we use substrate-mediated interactions to direct the arrangement of monomers prior to chemical bonding, we may be able to build atomically precise structures," says Weiss. "The key is to understand how the electronic functions of the molecule-surface interaction drive reactions and how they can be used to enhance chemical selectivity."

The researchers carried out the experiments in a low temperature scanning tunneling microscope (STM) under ultrahigh vacuum by exposing a close-packed copper surface to p-diiodobenzene molecules. On the surface, the molecules dissociate into phenylene (cyclic C6H4) reaction intermediates and two iodine atoms. The positions of these phenylene molecules are observed by STM. Extended structures self-assembled as long chains on the surface. While individual phenylene molecules remain mobile, molecules in the chains did not move under the imaging conditions. They were able to extract molecules from the chains, however, by applying voltage pulses to the STM tip. This suggests that the chains are not covalently bound together, but instead are held by electronic reactions between molecules that are mediated by the surface. These chains extended across atomic steps on the copper surface where the level of the surface drops by one atom, resembling a stair step. This is a region in which electronic perturbations would be expected to disrupt the continuity. "It amazed us that these extended structures could cross step boundaries," Weiss says. "These monomers have not yet formed covalent chemical bonds, which would link them together as a large molecule, but they are aligned and their interaction is much stronger than any previously observed."

Weiss and McCarty were surprised to find that although the protopolymer is 'ready' to form a molecule, individual units can still be manipulated and even pulled out of the chain. The protopolymer chains were stationary on the copper surface, but short chains on a phenylene-coated copper surface could be moved with the STM tip. The existence of this bonding state could potentially have significant implications for supramolecular design. These intermolecular interactions could be used to place compounds together like a jigsaw puzzle into complex structures based on the choice of assembly units and substrate surfaces--one more step toward the molecular design and engineering of new nanostructured materials.

This research was funded, in part, by the National Science Foundation, the Defense Advanced Research Projects Agency (DARPA), and the Office of Naval Research.