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Stress-tolerant tomato relative sequenced

Date:
July 28, 2014
Source:
University of California - Davis
Summary:
The genome of Solanum pennellii, a wild relative of the domestic tomato, has been published by an international group of researchers. The new genome information may help breeders produce tastier, more stress-tolerant tomatoes.
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Wild tomato species are not edible, but they can be bred with domestic tomatoes to introduce new traits such as flavor and drought resistance. A new genome sequence for wild Solanum pennellii will help this work. Pictured are domestic and wild tomato fruit. L to R: Solanum lycopersicum, and wild relatives S. pimpinellifolium, S. habrochaites and S. pennellii.
Credit: Brad Townsley, UC Davis

The genome of Solanum pennellii, a wild relative of the domestic tomato, has been published by an international group of researchers including the labs headed by Professors Neelima Sinha and Julin Maloof at the UC Davis Department of Plant Biology. The new genome information may help breeders produce tastier, more stress-tolerant tomatoes.

The work, published July 27 in the journal Nature Genetics, was lead by Björn Usadel and colleagues at Aachen University in Germany. The UC Davis labs carried out work on the transcriptome of S. pennellii -- the RNA molecules that are transcribed from DNA and then translated into proteins -- messages written from DNA and taken to other parts of the cell to tell it what to do. Analyzing the RNA transcriptome shows which genes are active under different circumstances. The UC Davis team published a paper last year comparing the RNA transcripts of domestic tomato and three wild relatives, including S. pennellii.

S. pennellii is inedible, but it can be interbred with domestic tomatoes to introduce useful traits, such as drought resistance. Using the new genome data, the researchers found genes related to dehydration resistance, fruit development and fruit ripening. They also found genes that contribute to volatile compounds related to fruit scent and flavor.

The UC Davis portion of the work was supported by a grant from the National Science Foundation.


Story Source:

The above story is based on materials provided by University of California - Davis. The original article was written by Andy Fell. Note: Materials may be edited for content and length.


Journal Reference:

  1. Anthony Bolger, Federico Scossa, Marie E Bolger, Christa Lanz, Florian Maumus, Takayuki Tohge, Hadi Quesneville, Saleh Alseekh, Iben Sørensen, Gabriel Lichtenstein, Eric A Fich, Mariana Conte, Heike Keller, Korbinian Schneeberger, Rainer Schwacke, Itai Ofner, Julia Vrebalov, Yimin Xu, Sonia Osorio, Saulo Alves Aflitos, Elio Schijlen, José M Jiménez-Goméz, Malgorzata Ryngajllo, Seisuke Kimura, Ravi Kumar, Daniel Koenig, Lauren R Headland, Julin N Maloof, Neelima Sinha, Roeland C H J van Ham, René Klein Lankhorst, Linyong Mao, Alexander Vogel, Borjana Arsova, Ralph Panstruga, Zhangjun Fei, Jocelyn K C Rose, Dani Zamir, Fernando Carrari, James J Giovannoni, Detlef Weigel, Björn Usadel, Alisdair R Fernie. The genome of the stress-tolerant wild tomato species Solanum pennellii. Nature Genetics, 2014; DOI: 10.1038/ng.3046

Cite This Page:

University of California - Davis. "Stress-tolerant tomato relative sequenced." ScienceDaily. ScienceDaily, 28 July 2014. <www.sciencedaily.com/releases/2014/07/140728154032.htm>.
University of California - Davis. (2014, July 28). Stress-tolerant tomato relative sequenced. ScienceDaily. Retrieved May 25, 2015 from www.sciencedaily.com/releases/2014/07/140728154032.htm
University of California - Davis. "Stress-tolerant tomato relative sequenced." ScienceDaily. www.sciencedaily.com/releases/2014/07/140728154032.htm (accessed May 25, 2015).

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