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Seeps are microbial hotspots, homes to cosmopolitan microorganisms

March 16, 2015
University of Delaware
A new study provides evidence that naturally occurring methane gas leaks in the sea floor are vital to the microbial diversity, and are highly diverse themselves.

A new study, "Global Dispersion and Local Diversification of the Methane Seep Microbiome," provides evidence methane seeps are habitats that harbor distinct microbial communities unique from other seafloor ecosystems. The article appeared in the March 16 issue of the Proceedings of the National Academy of Sciences (PNAS).

Methane seeps are natural gas leaks in the sea floor that emit methane into the water. Microorganisms that live on or near these seeps can use the methane as a food source, preventing the gas from collecting in the surrounding hydrosphere or migrating into the atmosphere.

"Marine environments are a potentially huge source for methane outputs to the atmosphere, but the surrounding microbes keep things in check by eating 75 percent of the methane before it gets to the atmosphere. These organisms are an important part of the underwater ecosystem, particularly as it relates to global gas cycles that are climate important in terms of greenhouse gas emissions," said article co-author Jennifer Biddle, an assistant professor of marine biosciences in the University of Delaware's College of Earth, Ocean, and Environment.

Acquiring deep sea samples is difficult. As a result, the deep sea is often poorly understood and scientifically under sampled.

"Scientists know that certain areas of the deep sea experience bursts of energy and that microbes can grow there, but they aren't sure what these microbes do or what environment they prefer," Biddle said.

As governments and industry contemplate mining the deep ocean as a potential industrial reserve for minerals and other important deposits, scientists like Biddle are considering climate change and how the warming of the ocean potentially could affect the deep water and the marine organisms that live there.

Biddle believes the data set created with her colleagues may offer an important window into understanding the current state of diversity and dispersal in the deep sea. This is particularly important, she said, because consumption of methane by microbes is an important control for methane concentrations from the seafloor.

"This collection of data is rare and valuable," Biddle said. "As the climate warms, changes are bound to occur. Without an initial data set there is no way to measure changes over time."

In the study, Biddle and her colleagues analyzed microbial samples from 23 methane seeps across the globe, and compared them to the microbial communities of 54 other seafloor ecosystems.

The collaborating scientists used what Biddle called "samples of opportunity" -- valuable samples on-hand in laboratory freezers from their previous research trips and those contributed from other colleagues they enlisted to help. The samples came from as close as the White Oak River Basin estuary in North Carolina and as far away as offshore Antarctica.

While the researchers theorized that bacteria and archaea would vary by the amount of methane emitted by a given seep, what they found was that methane secretion wasn't a determining factor; rather other energy sources from the surrounding environment were determined to have a greater role in determining what types of bacteria and microorganisms were present.

The scientists' findings indicate that, globally, methane seeps share a core community of bacteria and archaea, but that they are locally specific.

Biddle likened it to Darwin's expedition through the Galapagos Islands in the early 1800s, explaining that while Darwin noted that finches were present on every island he visited in the Galapagos Islands, he reported that the finches were individually different based on the island they were on.

"We found similar groups, but we did not find any one species that was distributed throughout the entire deep sea in all of these environments. This is significant because it tells us that our job is even more difficult than we thought," she said. Recent local sea floor mapping efforts by the National Oceanic Atmospheric Administration have led to discovery of new seeps up and down the Chesapeake Bay and Atlantic coast.

"It's an environment where there is a lot of discovery, new seeps are constantly found. It's intriguing to think we've now got reason to keep studying new seeps, determine how they are different and begin asking new questions" Biddle said.

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Materials provided by University of Delaware. Note: Content may be edited for style and length.

Journal Reference:

  1. S. Emil Ruff, Jennifer F. Biddle, Andreas P. Teske, Katrin Knittel, Antje Boetius, Alban Ramette. Global dispersion and local diversification of the methane seep microbiome. Proceedings of the National Academy of Sciences, 2015; 201421865 DOI: 10.1073/pnas.1421865112

Cite This Page:

University of Delaware. "Seeps are microbial hotspots, homes to cosmopolitan microorganisms." ScienceDaily. ScienceDaily, 16 March 2015. <>.
University of Delaware. (2015, March 16). Seeps are microbial hotspots, homes to cosmopolitan microorganisms. ScienceDaily. Retrieved April 20, 2024 from
University of Delaware. "Seeps are microbial hotspots, homes to cosmopolitan microorganisms." ScienceDaily. (accessed April 20, 2024).

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