Featured Research

from universities, journals, and other organizations

Sequencing Method Yields Fuller Picture

Date:
July 18, 2007
Source:
University of Southern California
Summary:
Sequence data for both chromosomes, can be inferred under the right circumstances through a new statistical method developed by USC biologists.

University of Southern California biologists have developed a method for sequencing both chromosomes of an organism.

Related Articles


Their study appears in a recent issue of Genome Research.

The statistical method is significant because when researchers announce they have sequenced an organism's genome, they really mean that they have created a mosaic of two chromosomes, said USC computational biologist Lei Li.

"A mosaic means it's not real," Li said.

Lead author and former graduate student Jong Hyun Kim, advised by Li and USC University Professor Michael Waterman, was able to infer a complete sequence of the chromosomes of Ciona intestinalis, a marine invertebrate, from existing sequencing data.

Kim's method exploited the high rate of genetic mutations in the organism. Other organisms with high genetic variability, such as certain fish, also may be suitable.

Because the human genome has a relatively low mutation rate, the method cannot be applied to people.

However, Kim said, the method might be useful in sequencing parts of the human genome that display high variability.

As a by-product of their analysis, the researchers added to growing evidence that so-called junk DNA may have a function after all.

Recent studies have shown that junk DNA expresses proteins which may regulate gene function, and that sections of junk DNA have been highly conserved during evolution, suggesting that they play an important role.

The Genome Research study confirms that many short sections of junk DNA are highly conserved, Li and Kim said.

The study was funded by the Centers of Excellence in Genomic Science at the National Institutes of Health.


Story Source:

The above story is based on materials provided by University of Southern California. Note: Materials may be edited for content and length.


Cite This Page:

University of Southern California. "Sequencing Method Yields Fuller Picture." ScienceDaily. ScienceDaily, 18 July 2007. <www.sciencedaily.com/releases/2007/07/070718001629.htm>.
University of Southern California. (2007, July 18). Sequencing Method Yields Fuller Picture. ScienceDaily. Retrieved October 25, 2014 from www.sciencedaily.com/releases/2007/07/070718001629.htm
University of Southern California. "Sequencing Method Yields Fuller Picture." ScienceDaily. www.sciencedaily.com/releases/2007/07/070718001629.htm (accessed October 25, 2014).

Share This



More Computers & Math News

Saturday, October 25, 2014

Featured Research

from universities, journals, and other organizations


Featured Videos

from AP, Reuters, AFP, and other news services

Real-Life Transformer Robot Walks, Then Folds Into a Car

Real-Life Transformer Robot Walks, Then Folds Into a Car

Buzz60 (Oct. 24, 2014) — Brave Robotics and Asratec teamed with original Transformers toy company Tomy to create a functional 5-foot-tall humanoid robot that can march and fold itself into a 3-foot-long sports car. Jen Markham has the story. Video provided by Buzz60
Powered by NewsLook.com
Microsoft Riding High On Strong Surface, Cloud Performance

Microsoft Riding High On Strong Surface, Cloud Performance

Newsy (Oct. 24, 2014) — Microsoft's Q3 earnings showed its tablets and cloud services are really hitting their stride. Video provided by Newsy
Powered by NewsLook.com
The Best Apps to Organize Your Life

The Best Apps to Organize Your Life

Buzz60 (Oct. 23, 2014) — Need help organizing your bills, schedules and other things? Ko Im (@konakafe) has the best apps to help you stay on top of it all! Video provided by Buzz60
Powered by NewsLook.com
Nike And Apple Team Up To Create Wearable ... Something

Nike And Apple Team Up To Create Wearable ... Something

Newsy (Oct. 23, 2014) — For those looking for wearable tech that's significantly less nerdy than Google Glass, Nike CEO Mark Parker says don't worry, It's on the way. Video provided by Newsy
Powered by NewsLook.com

Search ScienceDaily

Number of stories in archives: 140,361

Find with keyword(s):
 
Enter a keyword or phrase to search ScienceDaily for related topics and research stories.

Save/Print:
Share:  

Breaking News:

Strange & Offbeat Stories

 

Space & Time

Matter & Energy

Computers & Math

In Other News

... from NewsDaily.com

Science News

Health News

Environment News

Technology News



Save/Print:
Share:  

Free Subscriptions


Get the latest science news with ScienceDaily's free email newsletters, updated daily and weekly. Or view hourly updated newsfeeds in your RSS reader:

Get Social & Mobile


Keep up to date with the latest news from ScienceDaily via social networks and mobile apps:

Have Feedback?


Tell us what you think of ScienceDaily -- we welcome both positive and negative comments. Have any problems using the site? Questions?
Mobile iPhone Android Web
Follow Facebook Twitter Google+
Subscribe RSS Feeds Email Newsletters
Latest Headlines Health & Medicine Mind & Brain Space & Time Matter & Energy Computers & Math Plants & Animals Earth & Climate Fossils & Ruins