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Scientists discover how our circadian rhythm can be both strong and flexible

Combination of computer modeling and animal experiments reveal that master and slave oscillators function via different molecular mechanisms

February 17, 2022
Institute for Basic Science
The combination of mathematical modeling and experiments identifies the difference in molecular clockworks of the master and slave clock neurons in Drosophila. This solves the long-standing mystery of the molecular mechanisms underlying how the circadian (~24h) clock can exhibit paradoxical characteristics of robustness (strong rhythms), and plasticity (flexible adaption).

From tiny fruit flies to human beings, all animals on Earth maintain their daily rhythms based on their internal circadian clock. The circadian clock enables organisms to undergo rhythmic changes in behavior and physiology based on a 24-hour circadian cycle. For example, our own biological clock tells our brain to release melatonin, a sleep-inducing hormone, at night time.

The discovery of the molecular mechanism of the circadian clock was bestowed The Nobel Prize in Physiology or Medicine 2017. From what we know, no one centralized clock is responsible for our circadian cycles. Instead, it operates in a hierarchical network where there are "master pacemaker" and "slave oscillator."

The master pacemaker receives various input signals from the environment such as light. The master then drives the slave oscillator that regulates various outputs such as sleep, feeding, and metabolism. Despite the different roles of the pacemaker neurons, they are known to share common molecular mechanisms that are well conserved in all lifeforms. For example, interlocked systems of multiple transcriptional-translational feedback loops (TTFLs) composed of core clock proteins have been deeply studied in fruit flies.

However, there is still much that we need to learn about our own biological clock. The hierarchically-organized nature of master and slave clock neurons leads to a prevailing belief that they share an identical molecular clockwork. At the same time, the different roles they serve in regulating bodily rhythms also raise the question of whether they might function under different molecular clockworks.

Led by Prof. KIM Jae Kyoung and KIM Eun Young, researchers at the Institute for Basic Science (IBS) and Ajou University used a combination of mathematical and experimental approaches using fruit flies to answer this question. The team found that the master clock and the slave clock operate via different molecular mechanisms.

In both master and slave neurons of fruit flies, a circadian rhythm-related protein called PER is produced and degraded at different rates depending on the time of the day. Previously, the team found that the master clock neuron (sLNvs) and the slave clock neuron (DN1ps) have different profiles of PER in wild-type and Clk-Δ mutant Drosophila. This hinted that there might be a potential difference in molecular clockworks between the master and slave clock neurons.

However, due to the complexity of the molecular clockwork, it was challenging to identify the source of such differences. Thus, the team developed a mathematical model describing the molecular clockworks of the master and slave clocks. Then, all possible molecular differences between the master and slave clock neurons were systematically investigated by using computer simulations. The model predicted that PER is more efficiently produced and then rapidly degraded in the master clock compared to the slave clock neurons. This prediction was then confirmed by the follow-up experiments using animal.

Then, why do the master clock neurons have such different molecular properties from the slave clock neurons? To answer this question, the research team again used the combination of mathematical model simulation and experiments. It was found that the faster rate of synthesis of PER in the master clock neurons allows them to generate synchronized rhythms with a high level of amplitude. Generation of such a strong rhythm with high amplitude is critical to delivering clear signals to slave clock neurons.

However, such strong rhythms would typically be unfavorable when it comes to adapting to environmental changes. These include natural causes such as different daylight hours across summer and winter seasons, up to more extreme artificial cases such as jet lag that occurs after international travel. Thanks to the distinct property of the master clock neurons, it is able to undergo phase dispersion when the standard light-dark cycle is disrupted, drastically reducing the level of PER. The master clock neurons can then easily adapt to the new diurnal cycle. Our master pacemaker's plasticity explains how we can quickly adjust to the new time zones after international flights after just a brief period of jet lag.

It is hoped that the findings of this study can have future clinical implications when it comes to treating various disorders that affect our circadian rhythm. Chief investigator Kim notes, "When the circadian clock loses its robustness and flexibility, the circadian rhythms sleep disorders can occur. As this study identifies the molecular mechanism that generates robustness and flexibility of the circadian clock, it can facilitate the identification of the cause of and treatment strategy for the circadian rhythm sleep disorders."

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Materials provided by Institute for Basic Science. Note: Content may be edited for style and length.

Journal Reference:

  1. Eui Min Jeong, Miri Kwon, Eunjoo Cho, Sang Hyuk Lee, Hyun Kim, Eun Young Kim, Jae Kyoung Kim. Systematic modeling-driven experiments identify distinct molecular clockworks underlying hierarchically organized pacemaker neurons. Proceedings of the National Academy of Sciences, 2022; 119 (8): e2113403119 DOI: 10.1073/pnas.2113403119

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Institute for Basic Science. "Scientists discover how our circadian rhythm can be both strong and flexible." ScienceDaily. ScienceDaily, 17 February 2022. <>.
Institute for Basic Science. (2022, February 17). Scientists discover how our circadian rhythm can be both strong and flexible. ScienceDaily. Retrieved April 12, 2024 from
Institute for Basic Science. "Scientists discover how our circadian rhythm can be both strong and flexible." ScienceDaily. (accessed April 12, 2024).

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