Featured Research

from universities, journals, and other organizations

"Synthetic Life" -- Scripps Research Institute Scientists Make Bacteria Do What Nature Doesn't

Date:
April 25, 2001
Source:
The Scripps Research Institute
Summary:
Scientists at The Skaggs Institute for Chemical Biology at The Scripps Research Institute (TSRI), have published two separate papers in the current issue of the journal Science in which they describe two different ways of engineering bacterial cells to encode "unnatural" proteins.

La Jolla, CA, April 20, 2001 -- Scientists at The Skaggs Institute for Chemical Biology at The Scripps Research Institute (TSRI), have published two separate papers in the current issue of the journal Science in which they describe two different ways of engineering bacterial cells to encode "unnatural" proteins.

Related Articles


These proteins differ from those produced by other living organisms because they incorporate novel amino acids, the subunit molecules of which proteins are composed.

Both of these methods could provide powerful new mechanisms for studying protein and cellular functions, because they are proof-of-principal that bacterial strains can be made to incorporate novel amino acids into proteins. In addition, they could enable scientists to envision the possibility of engineering completely new proteins.

According to TSRI President Richard A. Lerner, M.D., "One of the holy grails of modern genetics is the extension of the genetic code to increase the ability of proteins to perform new chemical tasks. We at The Skaggs Institute of TSRI are extremely proud to have accomplished this by two separate routes."

Principal Investigators Peter Schultz, Ph.D., Scripps Family Chair, The Skaggs Institute and Department of Chemistry; and Paul Schimmel, Ph.D., Ernest and Jean Hahn Professor and Chair, The Skaggs Institute, and Departments of Molecular Biology and Chemistry, lead the two separate efforts.

Principal Investigators Peter Schultz, Ph.D., Scripps Family Chair, The Skaggs Institute and Department of Chemistry; and Paul Schimmel, Ph.D., Ernest and Jean Hahn Professor and Chair, The Skaggs Institute, and Departments of Molecular Biology and Chemistry, led the two separate efforts.

The research article, "Enlarging the Amino Acid Set of Escherichia coli by Infiltrating the Valine Coding Pathway," is authored by Volker Döring, Henning D. Mootz, Leslie A. Nangle, Tamara L. Hendrickson, Valérie de Crécy-Lagard, Paul Schimmel, and Philippe Marlière.

The research article, "Expanding the Genetic Code of Escherichia coli," is authored by Lei Wang, Ansgar Brock, Brad Herberich and Peter G. Schultz.

Encoding proteins from DNA is one of the most fundamental requirements for life, since proteins do much of the microscopic work of the cell and make up a large part of the physical structure of cells and tissue.

When a protein is expressed, an enzyme reads the DNA bases of a gene (A,G,C, and T), and transcribes them into RNA (A, G, C, and U). This so-called "message RNA" is translated by another enzyme, called the ribosome, into a protein, which is a chain of amino acids. For every codon on the mRNA—every three bases—the ribosome attaches another amino acid to the chain.

But even though there are 4x4x4 = 64 different codons (UAG, ACG, UTC, etc.) there are only 20 amino acids that all organisms use to produce proteins. One of the great unanswered questions of evolutionary biology is why there are only 20.

Some of the 64 codons are redundant, with several coding for the same amino acid, and a few of them are nonsense codons—they don't code for anything at all.

Schultz and his colleagues have developed a general method to make the bacterium Escherichia coli incorporate novel amino acids site-specifically. Their approach starts with generating an orthogonal transfer RNA/synthetase pair, which does not interact with other pairs existing in E. coli. Then the orthogonal synthetase was engineered so that it charges the orthogonal tRNA with an unnatural amino acid but not any natural amino acids.

The orthogonal tRNA delivers the attached novel amino acid into proteins in response to a UAG codon inserted at any position of interest.

Using this method, they have incorporated O-methyl-L-tyrosine into proteins with purity higher than 99 percent, which is close to the translation fidelity of natural amino acids.

Schimmel and his colleagues used a more general approach, which broadly incorporates the novel amino acid aminobutyrate into proteins where the amino acid valine should go. To do this, they modified the valine tRNA synthetase enzyme.

Using mutagenesis and screening, they were able to find a valine tRNA synthetase with no proofreading mechanism. In this mechanism, another part of the enzyme checks to see if it accidentally attached an aminobutyrate to a tRNA where it should have attached a valine.

Though aminobutyrate and valine are almost identical, the proofreading mechanism is highly specific, allowing fewer that one mistake in 100,000 tries.

But the proofreading mutants are so good at making mistakes that in their paper, Schimmel and his colleagues report that 24 percent of all the valines are randomly replaced with aminobutyrates.

These strange new proteins can then be purified and studied in isolation, or left in vivo and used as a probe to study cellular functions.

Furthermore, proteins with novel amino acids may prove to have enhanced or emergent properties. Having a bacterial expression system will make them trivial to produce on a massive scale.

The research was funded by The Skaggs Institute for Research, National Institutes of Health, National Foundation for Cancer Research, and the Office of Navy Research.


Story Source:

The above story is based on materials provided by The Scripps Research Institute. Note: Materials may be edited for content and length.


Cite This Page:

The Scripps Research Institute. ""Synthetic Life" -- Scripps Research Institute Scientists Make Bacteria Do What Nature Doesn't." ScienceDaily. ScienceDaily, 25 April 2001. <www.sciencedaily.com/releases/2001/04/010424073031.htm>.
The Scripps Research Institute. (2001, April 25). "Synthetic Life" -- Scripps Research Institute Scientists Make Bacteria Do What Nature Doesn't. ScienceDaily. Retrieved November 28, 2014 from www.sciencedaily.com/releases/2001/04/010424073031.htm
The Scripps Research Institute. ""Synthetic Life" -- Scripps Research Institute Scientists Make Bacteria Do What Nature Doesn't." ScienceDaily. www.sciencedaily.com/releases/2001/04/010424073031.htm (accessed November 28, 2014).

Share This


More From ScienceDaily



More Plants & Animals News

Friday, November 28, 2014

Featured Research

from universities, journals, and other organizations


Featured Videos

from AP, Reuters, AFP, and other news services

New Dinosaur Species Found in Museum Collection

New Dinosaur Species Found in Museum Collection

Reuters - Innovations Video Online (Nov. 27, 2014) — A British palaeontologist has discovered a new species of dinosaur while studying fossils in a Canadian museum. Pentaceratops aquilonius was related to Triceratops and lived at the end of the Cretaceous Period, around 75 million years ago. Jim Drury has more. Video provided by Reuters
Powered by NewsLook.com
Classic Hollywood Memorabilia Goes Under the Hammer

Classic Hollywood Memorabilia Goes Under the Hammer

Reuters - Entertainment Video Online (Nov. 26, 2014) — The iconic piano from "Casablanca" and the Cowardly Lion suit from "The Wizard of Oz" fetch millions at auction. Sara Hemrajani reports. Video provided by Reuters
Powered by NewsLook.com
Pet Dogs to Be Used in Anti-Ageing Trial

Pet Dogs to Be Used in Anti-Ageing Trial

Reuters - Innovations Video Online (Nov. 26, 2014) — Researchers in the United States are preparing to discover whether a drug commonly used in human organ transplants can extend the lifespan and health quality of pet dogs. Video provided by Reuters
Powered by NewsLook.com
From Popcorn To Vending Snacks: FDA Ups Calorie Count Rules

From Popcorn To Vending Snacks: FDA Ups Calorie Count Rules

Newsy (Nov. 25, 2014) — The US FDA is announcing new calorie rules on Tuesday that will require everywhere from theaters to vending machines to include calorie counts. Video provided by Newsy
Powered by NewsLook.com

Search ScienceDaily

Number of stories in archives: 140,361

Find with keyword(s):
 
Enter a keyword or phrase to search ScienceDaily for related topics and research stories.

Save/Print:
Share:  

Breaking News:

Strange & Offbeat Stories

 

Plants & Animals

Earth & Climate

Fossils & Ruins

In Other News

... from NewsDaily.com

Science News

Health News

Environment News

Technology News



Save/Print:
Share:  

Free Subscriptions


Get the latest science news with ScienceDaily's free email newsletters, updated daily and weekly. Or view hourly updated newsfeeds in your RSS reader:

Get Social & Mobile


Keep up to date with the latest news from ScienceDaily via social networks and mobile apps:

Have Feedback?


Tell us what you think of ScienceDaily -- we welcome both positive and negative comments. Have any problems using the site? Questions?
Mobile iPhone Android Web
Follow Facebook Twitter Google+
Subscribe RSS Feeds Email Newsletters
Latest Headlines Health & Medicine Mind & Brain Space & Time Matter & Energy Computers & Math Plants & Animals Earth & Climate Fossils & Ruins