Featured Research

from universities, journals, and other organizations

Evolution Of Gene Regulation: How Microbial Neighbors Settle Differences

Date:
May 30, 2009
Source:
Ludwig-Maximilians-Universität München
Summary:
Supply and demand could be a governing principle even at the genetic level, because most genes are only expressed when needed. New results show that, in microbes, evolutionary factors determine which regulation mechanism will regulate a given gene.

Even microbes are governed by the principle of supply and demand – at least at the genetic level. Not all of their gene products, the blueprints for proteins, are required at all times. That means most of their genes only become active when they are needed, as is the case in higher organisms. In the simplest case, a transcription factor will activate the gene in question at the right time. Genes that are regulated in a somewhat more complex manner, on the other hand, are kept inactive by a repressor that is removed only when the gene is needed.

Related Articles


Which of these two regulation mechanisms will develop is a question of demand, along the lines of a "use-it-or-lose-it" principle: if genes are frequently active, then, as a rule, they will be directly induced. Genes that encode more rarely used proteins, on the other hand, tend to be kept inactive by repressors. LMU physicist Ulrich Gerland and Professor Terence Hwa of the University of California have now demonstrated using computer simulations and theoretical analyses that another – indeed opposing – principle also comes into play: "wear-and-tear". According to this principle, direct activation can lead to harmful changes. "Which of the two principles prevails depends on evolutionary criteria such as the population size and the periods over which environmental changes take place," says Gerland. "Our study may serve as a useful basis for more detailed studies of the evolution of regulatory systems." 

Up until the middle of the 20th century, biochemists spent most of their efforts studying metabolism, i.e. obtaining energy from food. Less importance was given to the – technically inexplicable – question of how proteins were regulated as a response to internal and external signals. The biology of regulation only came into its own as an independent research field when technical progress opened the window to scientific analysis of DNA, the carrier of genetic traits, and to the synthesis of proteins, the most important functional elements of the cell. It quickly became clear that complex and diverse regulation mechanisms adapted the genetic activity of cells to internal and external conditions – even in microorganisms.

It is known, for example, that the intestinal bacterium Escherichia coli in the digestive tract of young mammals can break down lactose, the sugar abundant in mother's milk. To do this, the bacterium produces the enzyme lactase – but only if lactose is actually present. Most of the time, however, lactose is not present. At these times, the gene that encodes the lactase enzyme is blocked by a repressor. Only one key fits the lock to this protein, to detach the repressor from the lactase gene: a lactose molecule, as a single, unmistakable sign that this sugar is present and now available as food. Other genes, however, are regulated without the use of repressors: these genes are directly activated by a transcription factor that binds to them.

These are only two simple examples of mechanisms that regulate gene activity, and they are functionally equivalent. "The question was raised long ago as to whether nature's choice in favor of one of the two mechanisms is only random, or whether there are specific criteria," reports Gerland. "Studies have shown that the demand for a gene product is a decisive factor: it is mostly genes whose proteins are required most of the time that are directly activated. Proteins such as lactase, on the other hand, which are only used some of the time, tend to have genetic codes that are only released from their repressor when needed." The "use-it-or-lose-it" principle was proposed to explain this, which demands the frequent use of regulation factors because they would otherwise be subject to damaging effects.

Using computer simulations and theoretical calculations, Gerland and Hwa have now demonstrated that a second – even opposing – principle also comes into play: "wear-and-tear". Its name reflects the fact that constant use of regulators can also lead to detrimental consequences. The two researchers therefore investigated whether other factors that can affect the evolution of microorganisms play a role. "Our results clearly show that both principles are valid, even though they are actually contradictory," Gerland says. "In this conflict between maximal and minimal use of the regulators, other criteria do in fact come into play: the population size and the periods over which the environmental changes stretch."

Genetic regulation in small populations existing in an environment that only slowly changes is governed by the "use-it-or-lose-it" principle, with maximal use of the regulation proteins. In the opposite case, however, it is more "wear-and-tear" that comes into play with minimal use of the proteins. "The evolution of regulatory systems is still barely understood," reports Gerland. "So far, appropriate theoretical methods have also been largely lacking. But the time-dependent selection shown in our example may now prove to be an important factor in regulatory development. Many questions are still open, and our results will hopefully prompt further investigations."


Story Source:

The above story is based on materials provided by Ludwig-Maximilians-Universität München. Note: Materials may be edited for content and length.


Journal Reference:

  1. Gerland et al. Evolutionary selection between alternative modes of gene regulation. Proceedings of the National Academy of Sciences, May 22, 2009; DOI: 10.1073/pnas.0808500106

Cite This Page:

Ludwig-Maximilians-Universität München. "Evolution Of Gene Regulation: How Microbial Neighbors Settle Differences." ScienceDaily. ScienceDaily, 30 May 2009. <www.sciencedaily.com/releases/2009/05/090526102553.htm>.
Ludwig-Maximilians-Universität München. (2009, May 30). Evolution Of Gene Regulation: How Microbial Neighbors Settle Differences. ScienceDaily. Retrieved November 25, 2014 from www.sciencedaily.com/releases/2009/05/090526102553.htm
Ludwig-Maximilians-Universität München. "Evolution Of Gene Regulation: How Microbial Neighbors Settle Differences." ScienceDaily. www.sciencedaily.com/releases/2009/05/090526102553.htm (accessed November 25, 2014).

Share This


More From ScienceDaily



More Plants & Animals News

Tuesday, November 25, 2014

Featured Research

from universities, journals, and other organizations


Featured Videos

from AP, Reuters, AFP, and other news services

From Popcorn To Vending Snacks: FDA Ups Calorie Count Rules

From Popcorn To Vending Snacks: FDA Ups Calorie Count Rules

Newsy (Nov. 25, 2014) — The US FDA is announcing new calorie rules on Tuesday that will require everywhere from theaters to vending machines to include calorie counts. Video provided by Newsy
Powered by NewsLook.com
Feast Your Eyes: Lamb Chop Sent Into Space from UK

Feast Your Eyes: Lamb Chop Sent Into Space from UK

Reuters - Light News Video Online (Nov. 25, 2014) — Take a stab at this -- stunt video shows a lamb chop's journey from an east London restaurant over 30 kilometers into space. Rough Cut (no reporter narration). Video provided by Reuters
Powered by NewsLook.com
Cambodian Capital's Only Working Elephant to Retire in Jungle

Cambodian Capital's Only Working Elephant to Retire in Jungle

AFP (Nov. 25, 2014) — Phnom Penh's only working elephant was blessed by a crowd of chanting Buddhist monks Tuesday as she prepared for a life of comfortable jungle retirement after three decades of giving rides to tourists. Duration: 00:36 Video provided by AFP
Powered by NewsLook.com
Stray Dog Follows Adventure Racing Team for 6-Day Endurance Race

Stray Dog Follows Adventure Racing Team for 6-Day Endurance Race

Buzz60 (Nov. 24, 2014) — A Swedish Adventure racing team travels to try and win a world title, but comes home with something way better: a stray dog that joined the team for much of the grueling 430-mile race. Jen Markham has the story. Video provided by Buzz60
Powered by NewsLook.com

Search ScienceDaily

Number of stories in archives: 140,361

Find with keyword(s):
 
Enter a keyword or phrase to search ScienceDaily for related topics and research stories.

Save/Print:
Share:  

Breaking News:

Strange & Offbeat Stories

 

Plants & Animals

Earth & Climate

Fossils & Ruins

In Other News

... from NewsDaily.com

Science News

Health News

Environment News

Technology News



Save/Print:
Share:  

Free Subscriptions


Get the latest science news with ScienceDaily's free email newsletters, updated daily and weekly. Or view hourly updated newsfeeds in your RSS reader:

Get Social & Mobile


Keep up to date with the latest news from ScienceDaily via social networks and mobile apps:

Have Feedback?


Tell us what you think of ScienceDaily -- we welcome both positive and negative comments. Have any problems using the site? Questions?
Mobile iPhone Android Web
Follow Facebook Twitter Google+
Subscribe RSS Feeds Email Newsletters
Latest Headlines Health & Medicine Mind & Brain Space & Time Matter & Energy Computers & Math Plants & Animals Earth & Climate Fossils & Ruins