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Technology developed to redirect proteins towards specific areas of genome

Date:
July 10, 2014
Source:
Centro Nacional de Investigaciones Oncologicas (CNIO)
Summary:
A research group has managed to reprogram the binding of a protein called BuD to DNA in order to redirect it towards specific DNA regions. The lead researcher says the discovery "will allow us to modify and edit the instructions contained in the genome to treat genetic diseases or to develop genetically-modified organisms."

A change in the BuDs structure: before (left) and after (right) recognizing a specific DNA sequence.
Credit: Guillermo Montoya. CNIO

The Spanish National Cancer Research Centre (CNIO) Macromolecular Crystallography Group has managed to reprogramme the binding of a protein called BuD to DNA in order to redirect it towards specific DNA regions. Guillermo Montoya, the researcher who led the study, says the discovery: "will allow us to modify and edit the instructions contained in the genome to treat genetic diseases or to develop genetically-modified organisms." The study is published in the journal Acta Crystallographica, Section D: Biological Crystallography.

The possibility of making ΰ la carte modifications to the genome of living organisms could have a wide variety of applications, not only in the field of synthetic biology -- the science that seeks to create new living beings or improve existing ones for their biotechnological use -- but also for the treatment of human illnesses.

To achieve this, several researchers from around the world have focused on the proteins that bind to the DNA in very specific ways: their manipulation to direct them towards specific places in the genome, linked to their binding to genetic effectors (DNA repair or activator proteins, among others), could serve to modify DNA messages or to redesign genetic circuits as needed.

The CNIO team has deciphered the DNA binding code of BurrH, a new protein that was identified in Burkholderia rhizoxinica bacteria whose BuD domain specifically binds to the genome. To get there, the researchers have resolved the complete three-dimensional structure of the protein using the biophysical technique known as X-ray crystallography.

The main advantage of BuDs lies in their high specificity: they are able to distinguish DNA sequences that differ only in two nucleotides (the letters that make up the DNA). "This high specificity acts as a GPS that allows them to find their destinations within the intricate genome map," says Montoya, adding that: "They are very versatile and easy to reprogram in comparison with other proteins used to the same end."

Montoya's group has redesigned BuDs that are capable of recognizing the areas of the genome close to mutations responsible for sickle-cell disease, a pathology caused by modifications in the beta globin gene that produce alterations in red blood cells. "The linking of DNA repair proteins to these redesigned BuDs could serve to correct genetic alterations in patients with this disease," say the researchers.

Montoya says that several companies are already interested in this new technology: "Our tool, as well as being used to treat genetic disease, could be used to genetically modify micro-organisms targeting metabolite synthesis needed to produce biofuels, for example."


Story Source:

The above story is based on materials provided by Centro Nacional de Investigaciones Oncologicas (CNIO). Note: Materials may be edited for content and length.


Journal Reference:

  1. Stefano Stella, Rafael Molina, Blanca Lσpez-Mιndez, Alexandre Juillerat, Claudia Bertonati, Fayza Daboussi, Ramon Campos-Olivas, Phillippe Duchateau, Guillermo Montoya. BuD, a helix–loop–helix DNA-binding domain for genome modification. Acta Crystallographica Section D Biological Crystallography, 2014; 70 (7): 2042 DOI: 10.1107/S1399004714011183

Cite This Page:

Centro Nacional de Investigaciones Oncologicas (CNIO). "Technology developed to redirect proteins towards specific areas of genome." ScienceDaily. ScienceDaily, 10 July 2014. <www.sciencedaily.com/releases/2014/07/140710141632.htm>.
Centro Nacional de Investigaciones Oncologicas (CNIO). (2014, July 10). Technology developed to redirect proteins towards specific areas of genome. ScienceDaily. Retrieved July 22, 2014 from www.sciencedaily.com/releases/2014/07/140710141632.htm
Centro Nacional de Investigaciones Oncologicas (CNIO). "Technology developed to redirect proteins towards specific areas of genome." ScienceDaily. www.sciencedaily.com/releases/2014/07/140710141632.htm (accessed July 22, 2014).

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