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Efflux pump inhibitors: Bulking up to beat bacteria

Date:
October 31, 2022
Source:
Osaka University
Summary:
Researchers have used a combination of genetic manipulation and protein structural analysis to determine how the position of 'bulky' amino acids influences the ability of efflux pump inhibitors to bind bacterial pump proteins and so reduce their resistance to antibiotics. This work has implications for our understanding of bacterial antibiotic resistance, and may be useful in the rational design of drugs that target bacteria that have evolved antibiotic resistance.
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The medical profession is in the midst of losing an arms race. Bacterial antibiotic resistance doesn't just threaten our ability to treat infection but our ability to carry out any treatment where infection is a risk. This includes a raft of life-saving surgeries ranging from coronary bypass operations to organ transplantation. In fact, the number of new antimicrobials being developed is declining each year. Understanding how bacteria resist the influence of antibiotics is essential to winning this arms race: it is time to make up ground.

In a study published this month in Antimicrobial Agents and Chemotherapy,researchers at Osaka University have produced new insights into the structure of a particular bacterial protein known as an efflux pump. This protein is involved in antibiotic resistance and its structure influences the ability of drugs to target it.

Many conventional antibiotics, such as penicillin or erythromycin, work by making their way into a bacterial cell. Once there, the antibiotic prevents the cell from working properly by interfering with its molecular machinery. From a bacterium's perspective, this is where the efflux pump comes in handy; by pumping any compounds that are harmful to it (like antibiotics) out of the cell using an efflux pump, the bacterium can protect itself from them. Bacteria that have mutated to become particularly resistant to antibiotics often have many of these efflux pumps on their surface.

To counter this defense, researchers have produced a class of drugs that stop efflux pumps from working. These drugs, called efflux pump inhibitors, are effective at preventing the activity of some but not all types of efflux pump. Understanding how these drugs bind to efflux pumps is essential for understanding how they work, and so to producing new drugs.

Lead author Seiji Yamasaki says "We discovered the spatial characteristics of the inhibitor binding site in a bacterial efflux pump. We have succeeded in this analysis by examining the protein structure and by generating and analyzing a series of mutant pumps."

By using genetic manipulation to change the position of a "bulky" amino acid called tryptophan, the researchers were able to show which positions were important for the ability of a specific inhibitor called ABI-PP to bind to, and prevent the action of, a specific efflux pump called MexB. Specifically, they found that bulky mutations to the top and the middle of the binding site were particularly effective at preventing ABI-PP binding.

Senior author Kunihiko Nishino says "Our results highlight that the overall spatial characteristics of the inhibitor binding site are more relevant to prevention of inhibition than single mutations. We hope that this work will inform the rational design of drugs that target efflux pumps, helping us to eliminate drug-resistant bacteria in the future."


Story Source:

Materials provided by Osaka University. Note: Content may be edited for style and length.


Journal Reference:

  1. Seiji Yamasaki, Naoki Koga, Martijn Zwama, Keisuke Sakurai, Ryosuke Nakashima, Akihito Yamaguchi, Kunihiko Nishino. Spatial Characteristics of the Efflux Pump MexB Determine Inhibitor Binding. Antimicrobial Agents and Chemotherapy, 2022; DOI: 10.1128/aac.00672-22

Cite This Page:

Osaka University. "Efflux pump inhibitors: Bulking up to beat bacteria." ScienceDaily. ScienceDaily, 31 October 2022. <www.sciencedaily.com/releases/2022/10/221031104441.htm>.
Osaka University. (2022, October 31). Efflux pump inhibitors: Bulking up to beat bacteria. ScienceDaily. Retrieved April 27, 2024 from www.sciencedaily.com/releases/2022/10/221031104441.htm
Osaka University. "Efflux pump inhibitors: Bulking up to beat bacteria." ScienceDaily. www.sciencedaily.com/releases/2022/10/221031104441.htm (accessed April 27, 2024).

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