Science News

... from universities, journals, and other research organizations

DNA 'Barcode' Identified For Plants

Feb. 7, 2008 — A 'barcode' gene that can be used to distinguish between the majority of plant species on Earth has been identified. This gene, which can be used to identify plants using a small sample, could lead to new ways of easily cataloguing different types of plants in species-rich areas like rainforests. It could also lead to accurate methods for identifying plant ingredients in powdered substances, such as in traditional Chinese medicines, and could help to monitor and prevent the illegal transportation of endangered plant species.


Share This:

The team behind the discovery found that DNA sequences of the gene 'matK' differ among plant species, but are nearly identical in plants of the same species. This means that the matK gene can provide scientists with an easy way of distinguishing between different plants, even closely related species that may look the same to the human eye.

The researchers made this discovery by analysing the DNA from different plant species. They found that when one plant species was closely related to another, differences were usually detected in the matK DNA.

The researchers, led by Dr Vincent Savolainen, dual appointee at Imperial College London's Department of Life Sciences and the Royal Botanic Gardens, Kew, carried out two large-scale field studies: one on the exceptionally diverse species of orchids found in the tropical forests of Costa Rica, and the other on the trees and shrubs of the Kruger National Park in South Africa. Dr Savolainen and his colleagues in the UK worked alongside collaborators from the Universities of Johannesburg and Costa Rica who played a key role in this new discovery.

Using specimens collected from Costa Rica, Dr Savolainen and colleagues were able to use the matK gene to identify 1,600 species of orchid. In the course of this work, they discovered that what was previously assumed to be one species of orchid was actually two distinct species that live on different slopes of the mountains and have differently shaped flowers adapted for different pollinating insects.

In South Africa the team was able to use the matK gene to identify the trees and shrubs of the Kruger National Park, also well known for its big game animals.

Dr Savolainen explains that in the long run the aim is to build on the genetic information his team gathered from Costa Rica and South Africa to create a genetic database of the matK DNA of as many plant species as possible, so that samples can be compared to this database and different species accurately identified.

"In the future we'd like to see this idea of reading plants' genetic barcodes translated into a portable device that can be taken into any environment, which can quickly and easily analyse any plant sample's matK DNA and compare it to a vast database of information, allowing almost instantaneous identification, " he says.

Although Dr Savolainen concedes that such technological applications may be some years away from realisation, he says the potential uses of the matK gene are substantial: "There are so many circumstances in which traditional taxonomic identification of plant species is not practical - whether it be at ports and airports to check if species are being transported illegally, or places like Costa Rica where the sheer richness of one group of plants, like orchids, makes accurate cataloguing difficult."

The matK gene may not, however, be able to be used to identify every plant species on Earth. In a few groups of species, additional genetic information may be required for species-level identification because hybridization - where species cross-breed and genetic material is rearranged - may confuse the information provided by matK.

Journal article: 'DNA barcoding the floras of biodiversity hotspots' Proceedings of the National Academy of Sciences, Online Early Edition, Monday 4 January 2008.

Authors: Renaud Lahaye, Michelle van der Bank, Diego Bogarin, Jorge Warner, Franco Pupulin, Guillaume Gigot , Olivier Maurin, Sylvie Duthoit, Timothy G. Barraclough, Vincent Savolainen.

This research was funded by the Defra Darwin Initiative, the Universities of Johannesburg and Costa Rica, the South African National Research Foundation, the Royal Botanic Gardens, Kew, and the Royal Society.

Share this story on Facebook, Twitter, and Google:

Other social bookmarking and sharing tools:

|

Story Source:

The above story is reprinted from materials provided by Imperial College London.

Note: Materials may be edited for content and length. For further information, please contact the source cited above.


APA

MLA

Note: If no author is given, the source is cited instead.

Search ScienceDaily

Number of stories in archives: 137,088

Find with keyword(s):
 
Enter a keyword or phrase to search ScienceDaily's archives for related news topics,
the latest news stories, reference articles, science videos, images, and books.

Recommend ScienceDaily on Facebook, Twitter, and Google:

Other social bookmarking and sharing services:

|

 
  more breaking science news

Social Networks


Recommend ScienceDaily on Facebook, Twitter, and Google +1:

Other social bookmarking and sharing tools:

|

Breaking News

... from NewsDaily.com

In Other News ...

Science Video News


Name That Species

Extremophiles are microbes that have adapted to extreme environments, such as Utah's Great Salt Lake. But new microorganisms can be found in everyday. ...  > full story

Strange Science News

 

Free Subscriptions

... from ScienceDaily

Get the latest science news with our free email newsletters, updated daily and weekly. Or view hourly updated newsfeeds in your RSS reader:

Feedback

... we want to hear from you!

Tell us what you think of ScienceDaily -- we welcome both positive and negative comments. Have any problems using the site? Questions?

Post this page to your favorite social bookmarking site:
Include this item in your blog or web site:
Cite this article in your essay, paper, or report:
Email this page's link to a friend or colleague: