Science News
from research organizations

New methodology tracks changes in DNA methylation in real time at single-cell resolution

Date:
September 24, 2015
Source:
Whitehead Institute for Biomedical Research
Summary:
A tool that allows scientists to monitor changes in DNA methylation over time in individual cells has been developed by a group of researchers. Certain diseases, including cancer, cause changes in DNA methylation patterns, and the ability to document these alterations could aid in the development of novel therapies.
Share:
FULL STORY

Whitehead Institute researchers have developed a methodology to monitor changes in DNA methylation over time in individual cells.

DNA methylation is essential for the proper control of gene expression and cell identity -- what enables cells with the same genetic material to become, for example, a nerve cell, a muscle cell or a skin cell. Certain diseases, including cancer, involves changes in DNA methylation patterns, and the ability to document these alterations aid in the development of novel therapies.

"Methylation is really key in development, in disease, and in cancer," says Whitehead Founding Member Rudolf Jaenisch, who is also a professor of biology at MIT. "This reporter is a very important tool. We believe it will allow us to look in a very detailed way at issues like imprinting during development and screening for the activation of genes silenced in diseases like cancer. This method will allow us to see which drug will activate a given gene."

An individual's cells rely on the same set of genes as instructions for protein production. The differences between a muscle cell and a brain cell are attributable to differences in gene expression; that is, which genes are turned on and off. DNA methylation -- the addition of methyl groups to the DNA -- is an epigenetic mechanism that controls gene expression. In most cases, methylated genes are switched off, while unmethylated genes are active.

To date, scientists have only been able to study methylation in a population of cells by taking a "snapshot" of a few cells, a process that destroys the very cells under study. Because most cell populations in vivo are heterogeneous, and methylation can change over time, existing approaches have offered limited insight into this fundamental biological control.

Creating a system that dynamically visualizes methylation at the level of a single cell intrigued Yonatan Stelzer, a postdoctoral researcher in Jaenisch's lab. Working with graduate student Chikdu Shivalila, Stelzer synthesized a DNA methylation reporter that mirrors whether a nearby region is methylated. When the target region is unmethylated, the reporter is also unmethylated, which allows expression of a glowing protein encoded by the reporter. This protein illuminates the cell. When the target is methylated, so too is the reporter, and the glowing protein remains unexpressed, leaving the cell unlit. As the target region's methylation changes, so does the reporter's.

Stelzer and Shivalila describe their work in this week's issue of the journal Cell.

"Pharmaceutical companies have been interested in manipulating methylation in disease," says Stelzer. "Now that we have a reporter for methylation, they can screen for small molecules or genes that can change a cell's phenotype. For example, they could look for a drug that could change the hypermethylation that has been associated with a specific cancer."

Using the method, scientists should learn much more about methylation itself.

"This opens up a whole new field of research," says Shivalila. "You can use it to answer all of these questions about methylation that are completely unknown, including how methylation regulates gene transcription and expression patterns in cells. It's very exciting."


Story Source:

Materials provided by Whitehead Institute for Biomedical Research. Original written by Nicole Giese Rura. Note: Content may be edited for style and length.


Journal Reference:

  1. Yonatan Stelzer, Chikdu Shakti Shivalila, Frank Soldner, Styliani Markoulaki, Rudolf Jaenisch. Tracing dynamic changes of DNA methylation at single cell resolution. Cell, September 2015 DOI: 10.1016/j.cell.2015.08.046

Cite This Page:

Whitehead Institute for Biomedical Research. "New methodology tracks changes in DNA methylation in real time at single-cell resolution." ScienceDaily. ScienceDaily, 24 September 2015. <www.sciencedaily.com/releases/2015/09/150924124457.htm>.
Whitehead Institute for Biomedical Research. (2015, September 24). New methodology tracks changes in DNA methylation in real time at single-cell resolution. ScienceDaily. Retrieved May 24, 2017 from www.sciencedaily.com/releases/2015/09/150924124457.htm
Whitehead Institute for Biomedical Research. "New methodology tracks changes in DNA methylation in real time at single-cell resolution." ScienceDaily. www.sciencedaily.com/releases/2015/09/150924124457.htm (accessed May 24, 2017).

RELATED STORIES